Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
UCEC rs7757651 chr6:5124352 A/C 3.2E-9 174 22.7 23.35 5.97 KM Plot
UCEC rs77698779 chr13:44243492 C/T 0 173 22.63 19.53 0.43 KM Plot
UCEC rs77726188 chr7:20676984 C/G 1.12E-11 173 22.63 19.17 4.33 KM Plot
UCEC rs77734210 chr14:73529362 G/C 5.92E-7 172 22.38 22.63 10.33 KM Plot
UCEC rs77746929 chr14:73581292 C/T 4.47E-7 173 22.57 22.63 10.33 KM Plot
UCEC rs77923898 chr7:20680049 A/G 9.52E-12 174 22.67 19.17 4.33 KM Plot
UCEC rs77962359 chr3:48013212 G/A 6.44E-6 174 22.63 20.13 11.53 KM Plot
UCEC rs78187696 chr13:81481967 A/T 6.01E-6 168 22.7 19.8 20.33 KM Plot
UCEC rs78240897 chr5:54334643 G/T 7.13E-9 170 21.5 28.03 20.33 KM Plot
UCEC rs78258865 chr14:105073105 C/T 0 167 22.57 22.78 1.67 KM Plot
UCEC rs78277102 chr14:73543783 C/T 4.68E-7 173 22.57 22.63 10.33 KM Plot
UCEC rs78304949 chr14:73623174 C/T 4.44E-7 174 22.57 27.05 10.33 KM Plot
UCEC rs78366241 chr15:42895209 C/T 6.03E-5 174 21.9 25.55 22.43 KM Plot
UCEC rs78444311 chr14:105077377 G/C 0 168 22.57 22.78 1.67 KM Plot
UCEC rs78489586 chr14:73385482 C/T 6.53E-7 170 22.75 21.03 10.33 KM Plot